SMuFin - Downloads

SMuFin Program

The new version of the SMuFin is focused to solve specific bugs found by ursers about bam executions. If you are interested on running SMuFin using fastq files, download the previous version.

Download new SMuFin verion: SMuFin v0.9.4

(modified 2016-02-26)

Downloading the previous version: SMuFin v0.9.3

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Fasta files with controlled mutations

Additional files: In-silico genome and variant catalog as described in Moncunil & Gonzalez, et al, Nat. Biotech, 2014.

List of variants inserted in the in-silico genomes are found here:

Germline
	File allele 1
	File allele 2

Somatic
	File allele 1
	File allele 2

Fasta files for the modeled normal and tumor samples.

Example dataset

This dataset is an example that contains all files needed to execute the SMuFin program and check the results.

Performance on different sequencing conditions

Download Performance test file

SMuFin is a software constantly under development to improve performance and detection capabilities. So, exceptionally, bugs that have not yet been noticed could be found. Due to performance and parallelizations reasons, the SMuFin web's code of current release temporarly uses BWA that slightly increases efficiency in cluster-based environments. So the SMuFin's code described in the paper does not completelly coincide with the open source at this moment. We are developing an improved form of suffix tree that will be soon implemented and released. We would appreciate your help in reporting any issue that you might have with the instalation or execution of the program, in order to be able to address bugs that are unknwon or unforseen to us. We thank you for your understanding and for your interest in SMuFin.