Services & Data
 
Services
Somatic Mutation Finder (SMuFin)
  SMuFin (Somatic MUtation FINder) is a reference-free method designed to identify somatic variation on tumor genomes from the direct comparison with the corresponding normal genome of the same patient. Through a single execution SMuFin is able to identifying somatic single nucleotide variants (SNVs) and structural variants (SVs) of any size. (Moncunill V. & Gonzalez S., et al, Nature Biotechnology 2014).
Prediction of regulatory region and conserved TFBSs: ReLA
  ReLA (REgulatory region Local Alignment tool) is a method optimized with the Smith-Waterman algorithm that identifies gene regulatory regions in genomic DNA sequences through local searches of clusters of coincident transcription factor binding sites between two or more DNA sequences. ReLA can identify these regulatory regions through the comparison of homologous (orthologs and paralogs) or co-expressed sequences. Our server also allows the identification of more than one regulatory region (alternative promoters) within the reference sequence (Gonzalez S., et al, Bioinformatics 2012).